PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053883.130
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 195aa    MW: 22658.4 Da    PI: 9.8095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053883.130genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.12.6e-201764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++l+++++ +G+++Wk++a++ g++R++k+c++rw++yl
    EcC053883.130 17 RGAWTSEEDQKLAQVIETHGPRRWKLVAAKAGLNRCGKSCRLRWLNYL 64
                     89********************************************97 PP
2Myb_DNA-binding491.4e-1570113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
    EcC053883.130  70 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 113
                      78999*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.6711268IPR017930Myb domain
SuperFamilySSF466892.02E-2915111IPR009057Homeodomain-like
SMARTSM007172.8E-161666IPR001005SANT/Myb domain
PfamPF002492.4E-191764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-251871IPR009057Homeodomain-like
CDDcd001672.39E-111964No hitNo description
SMARTSM007171.1E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129420.18869119IPR017930Myb domain
PfamPF002496.3E-1470113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2472120IPR009057Homeodomain-like
CDDcd001671.51E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006508Biological Processproteolysis
GO:0006559Biological ProcessL-phenylalanine catabolic process
GO:0015935Cellular Componentsmall ribosomal subunit
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016841Molecular Functionammonia-lyase activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MPTTPTRSRC SKRDANRGAW TSEEDQKLAQ VIETHGPRRW KLVAAKAGLN RCGKSCRLRW  60
LNYLRPNIKR GNISDQEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSRLSKKIK  120
QKESQSKFLE PDQSQDPRNN PSAMHSVADN DGGTSKREEE MKSDVSRDDF LDNFNEGPLN  180
LEWMSKFLEV DESWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30141194108B-MYB
1gv2_A4e-30171194105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047393.11e-142PREDICTED: transcription factor MYB114
SwissprotP102901e-52MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A059CLE91e-141A0A059CLE9_EUCGR; Uncharacterized protein
STRINGXP_010047393.11e-142(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.19e-50myb domain protein 5
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]