PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053935.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 181aa    MW: 21431.6 Da    PI: 8.719
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053935.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.63e-111286282
          FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82
                  fY++ Ake+GF++r++++k++  ++e   + ++C ++g++ e++       ++r+ +  gC  ++++++ + +kw+++k++
  EcC053935.30 12 FYDNCAKEAGFEIRVNSHKRK-GSKEKCGAVLCCICQGYKIEKELV-----KSRSRKSYGCLTMVRIHLVEPQKWKIAKVV 86
                  9***************99887.6777899**********9998766.....8899999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-81286IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0055114Biological Processoxidation-reduction process
GO:0005737Cellular Componentcytoplasm
GO:0003676Molecular Functionnucleic acid binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEFNSYDKAY AFYDNCAKEA GFEIRVNSHK RKGSKEKCGA VLCCICQGYK IEKELVKSRS  60
RKSYGCLTMV RIHLVEPQKW KIAKVVIEGR YENLNFEGKD VRNHVERYKR MKLQEGDGQV  120
LFNYFSTMLL KISIFYYVLD LDNEQRLYNI FWVEAQSRDA YTYFGDVVTF DTTYFKAILE  180
T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-31FAR1-related sequence 6