PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053967.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28533.8 Da    PI: 6.8798
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053967.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.3e-28959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  k+i+n + rqvtfskRr g++KKA ELSvLCdaevav+ifs tgkl+eyss
  EcC053967.20  9 KKIDNVTARQVTFSKRRRGLFKKAGELSVLCDAEVAVVIFSATGKLFEYSS 59
                  68***********************************************96 PP
2K-box47.48.3e-171352003398
         K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   + +R+l GedL+ L+++eLqqLe+ Le +l+++  +K+e ++++i +l  k  el eenk+L++ +
  EcC053967.20 135 HCNRQLRGEDLQGLNIEELQQLEKMLEAGLNRVLVTKEERIRTEITDLETKGAELIEENKMLKQTM 200
                   567***********************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.688161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-37160IPR002100Transcription factor, MADS-box
CDDcd002657.81E-40278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-31375IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.023116206IPR002487Transcription factor, K-box
PfamPF014863.4E-14135200IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007018Biological Processmicrotubule-based movement
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010215Biological Processcellulose microfibril organization
GO:0042127Biological Processregulation of cell proliferation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005856Cellular Componentcytoskeleton
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAREKIKIKK IDNVTARQVT FSKRRRGLFK KAGELSVLCD AEVAVVIFSA TGKLFEYSSS  60
SMKDTLERYT LHHNNLENMD QPSLELQLEH SNNMRLSKEV AEKSHRLRYT FFIGLHKKLV  120
LMLVGIPIVD LWLLHCNRQL RGEDLQGLNI EELQQLEKML EAGLNRVLVT KEERIRTEIT  180
DLETKGAELI EENKMLKQTM TTLTKGKRHI VTEPDVALPE EGVSSESATN VCSCNSGPPL  240
EDDGSDTSLK LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19173173MEF2C
5f28_B1e-19173173MEF2C
5f28_C1e-19173173MEF2C
5f28_D1e-19173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060099.11e-154PREDICTED: MADS-box protein SVP isoform X2
SwissprotQ9FUY66e-85JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A059BL701e-152A0A059BL70_EUCGR; Uncharacterized protein
STRINGXP_010060098.11e-151(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]