PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053979.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 302aa    MW: 33387.2 Da    PI: 8.1953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053979.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19113163256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+WvAeIr p +   r+r++lg++++ae Aa a+++a+ kl+ge
  EcC053979.80 113 LYRGVRQRH-WGKWVAEIRLPQN---RTRVWLGTYDSAESAAYAYDRAAFKLRGE 163
                   59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.10E-33112172No hitNo description
SuperFamilySSF541711.24E-22113170IPR016177DNA-binding domain
PROSITE profilePS5103223.051113170IPR001471AP2/ERF domain
SMARTSM003803.5E-36113176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-31113171IPR001471AP2/ERF domain
PfamPF008474.2E-14114163IPR001471AP2/ERF domain
PRINTSPR003674.9E-10114125IPR001471AP2/ERF domain
PRINTSPR003674.9E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004467Molecular Functionlong-chain fatty acid-CoA ligase activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDTILQNLPP VTYTNHNDGG NIPSSLSELI LKGFGSNTLD LIFSNSDRTN STTDNTPIRE  60
TLGSSIYMLH RDLMQNFCNQ NNSNTYLTHA ASVPASQHYD NMSPYPVPPK KKLYRGVRQR  120
HWGKWVAEIR LPQNRTRVWL GTYDSAESAA YAYDRAAFKL RGEYARLNFP ELKDLKDLKE  180
SGLADSKKLN AVRSSVDAKI NAICQKARKE RVRRSTRKGE GPATQATSCS LSSSSSSSSS  240
SSWGSEVMLS PSCSEDEEMR RLVSSNPSGS AGSTGPESVL EGCSLETMPS FDLELIWEIL  300
AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-21112170160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20110170263ATERF1
3gcc_A1e-20110170263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053127.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-55ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A059CG700.0A0A059CG70_EUCGR; Uncharacterized protein
STRINGXP_010053127.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.15e-50ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]