PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053990.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 710aa    MW: 81960.3 Da    PI: 8.0111
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053990.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.51.1e-2388173190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   +fY+eYA++vGF +++++s++sk++g++++ +  Cs+ g+++e++++     ++r+  +t+Cka +++k+++dg w ++++++eHnH++ 
  EcC053990.70  88 SFYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGSKRESSST----VHPRPCMKTNCKAGMNMKRREDGIWIIYSVVKEHNHDID 173
                   5*****************************************99887....99**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-2188173IPR004330FAR1 DNA binding domain
PfamPF105512.2E-27256349IPR018289MULE transposase domain
PROSITE profilePS5096610.027536572IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-6545570IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-5547574IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005506Molecular Functioniron ion binding
GO:0008270Molecular Functionzinc ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MPAEEEDVNS HEGSENILVA PHCNSGENVN SHNGGEDMMG APQHDSEEND ACIMNQVGTN  60
SIVDVHHRLL STDPRIGLEF QTKEAAYSFY REYARSVGFG ITIKASRRSK KSGKFIDVKI  120
ACSRFGSKRE SSSTVHPRPC MKTNCKAGMN MKRREDGIWI IYSVVKEHNH DIDPDDFYNS  180
LWGRTKQSGA LAYQKKGLQA FLNEEDTQVM LEHFMSMQQE NPNFFYAVDL GPDKCLRNVF  240
WVDAKGRHDY GSFCDVVYFD IFYVKEKYGI PFLPIVGVNH HAQYLLLGCA LIGAEGKLSY  300
SWVMQAWLNA MGHQAPKVII TDQDKQLKEA VADVFPDIRH CFCLWHIFRK IPLTLAHVLD  360
KYDKFMDKFN KCVYLSWTEE QFEKRWQKLI HKFEVGEDEW VCSLYEDRKK WVPTYMQDAF  420
LAGMSSADRT RSMTAFFDSY LYRGISFKDF LKQYKVYLQE RYEREAASDA ESRYKPPVLR  480
SALTFEKQLS TIYTNAVFKQ FQDEVLGVEL CHLQRENGNE PAAIFRVEEH RKSQNFFVSW  540
KEVDAEILCS CKSFEYRGFL CRHAMLVLQT SGVSSIPCQY ILKRWTKNAK IRETESEKSK  600
ELLASRMQRF NDLCKRAIKL GEQGSLSQEA YNIACQALEE VSRQYSRVNS RWSVSEPGLV  660
AAHQNAEAPE ENNRNVVKSL KRKKICKKRK VSLRLEFDTL SSKCVAATVT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727910.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X2
SwissprotQ3EBQ30.0FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A059DCQ80.0A0A059DCQ8_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010044813.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.30.0FAR1-related sequence 2
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]