PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC053990.90

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 784aa MW: 89921 Da PI: 7.3697

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC053990.90	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.6	7.7e-27	89	191	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +++ +ra +t+Cka+++vk+++dgkw+++++++eH EcC053990.90 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSfnrprarqskqdPDNATGRRACAKTDCKASMHVKRRSDGKWVIHTFVKEH 185 5****************************************9999999998776655444555999************************* PP FAR1 86 nHelap 91 nHel p EcC053990.90 186 NHELLP 191 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-24	89	191	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-29	289	380	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010218	Biological Process	response to far red light
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005506	Molecular Function	iron ion binding
GO:0008270	Molecular Function	zinc ion binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	Molecular Function	heme binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MDIDLRLPSG GHEKEEEEPH GIDNMLDGDE KLHNGDMVTT TLADLGDVSH ASDGGALNPP 60 TADMMEVKEY MNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYEKSFNRPR ARQSKQDPDN ATGRRACAKT DCKASMHVKR RSDGKWVIHT 180 FVKEHNHELL PAQAISEQTR KMYAAMARQF AEYKNVVGLK NDTRNPFEKG RNILLEGGDA 240 RILLEFFSQM QCSNSNFFHA VDLADDQRIR SLLWVDAKSR HDYSSFSDVI SFDTTYIRSK 300 YKMPLALFVG VNQHYQFMLL GCALLSDESA ATYSWLMQTW LKAVGGQHPK AIITDQDKTI 360 KTVISDVFHS SRHCFCLWQI WGKLSENLSH VIKRHDNFMA KFEKCVNRSW TEAEFEKRWW 420 KIINRCELRE DEWMHSLYED RRHWVPTFLK DAFFAGMCSI QRADSVNAFF DKYVHKKTTX 480 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 540 XXXXXXXXXX XXXXXXAKNR LLMTEESEQV QSRVQRYNDL CQRAMRLSEE GSLSQEAYSL 600 ASRAIEEVFG NCIGQNTISK GLAEAGTSAT HSLLCAEDDS QVRGMSKTNK KKNPTKKRKV 660 TSEPDIMTIG AQESLQQMEK LTPRAVTTLD SYYGTQQSVP GMVQLNLMAP TRDNYYGSQQ 720 TIQGLGQLNS IAPSHDGYYT PQQSMHGLGQ MDFFRSPGGF TYSIRQDDSN VRAAQLHEDA 780 SRHA

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MDIDLRLPSG GHEKEEEEPH GIDNMLDGDE KLHNGDMVTT TLADLGDVSH ASDGGALNPP  60
TADMMEVKEY MNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYEKSFNRPR ARQSKQDPDN ATGRRACAKT DCKASMHVKR RSDGKWVIHT  180
FVKEHNHELL PAQAISEQTR KMYAAMARQF AEYKNVVGLK NDTRNPFEKG RNILLEGGDA  240
RILLEFFSQM QCSNSNFFHA VDLADDQRIR SLLWVDAKSR HDYSSFSDVI SFDTTYIRSK  300
YKMPLALFVG VNQHYQFMLL GCALLSDESA ATYSWLMQTW LKAVGGQHPK AIITDQDKTI  360
KTVISDVFHS SRHCFCLWQI WGKLSENLSH VIKRHDNFMA KFEKCVNRSW TEAEFEKRWW  420
KIINRCELRE DEWMHSLYED RRHWVPTFLK DAFFAGMCSI QRADSVNAFF DKYVHKKTTX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXAKNR LLMTEESEQV QSRVQRYNDL CQRAMRLSEE GSLSQEAYSL  600
ASRAIEEVFG NCIGQNTISK GLAEAGTSAT HSLLCAEDDS QVRGMSKTNK KKNPTKKRKV  660
TSEPDIMTIG AQESLQQMEK LTPRAVTTLD SYYGTQQSVP GMVQLNLMAP TRDNYYGSQQ  720
TIQGLGQLNS IAPSHDGYYT PQQSMHGLGQ MDFFRSPGGF TYSIRQDDSN VRAAQLHEDA  780
SRHA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00078	ChIP-seq	Transfer from AT3G22170	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044783.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_010044788.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_018727883.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A059DDJ6	0.0	A0A059DDJ6_EUCGR; Uncharacterized protein
STRING	XP_010044783.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]