PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC053999.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 328aa MW: 36748.2 Da PI: 7.5975

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC053999.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100	3.3e-31	49	185	1	122
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sg 81 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ + EcC053999.10 49 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggET 143 799**********.99*****5553344444434666646******.555666799**************7333455554477 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWv 122 +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wv EcC053999.10 144 RWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWV 185 8********.999*******5547999999**8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-29	45	185	IPR003441	NAC domain
PROSITE profile	PS51005	23.72	49	217	IPR003441	NAC domain
Pfam	PF02365	8.8E-12	50	185	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006002	Biological Process	fructose 6-phosphate metabolic process
GO:0006096	Biological Process	glycolytic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006749	Biological Process	glutathione metabolic process
GO:0003677	Molecular Function	DNA binding
GO:0003840	Molecular Function	gamma-glutamyltransferase activity
GO:0003872	Molecular Function	6-phosphofructokinase activity
GO:0005524	Molecular Function	ATP binding
GO:0016787	Molecular Function	hydrolase activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MNNSSSSNLG SISSSDLIDA KLEEHQICGS KQCPGCGHKL DGKPDWLGLP AGVKFDPTDQ 60 ELIEHLEAKV EAKDMKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK 120 AYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE 180 KTNWVGIGEA STGREAPTSG TCEDIRDHHQ YQRLHHPVAP HDHQLHHQHH VHHPIATAAF 240 HISRPSHPIS AIIAPPAPLH QTAASINILD EDSFHVSRMM LQNEFQQQQQ QQQQHQQQEQ 300 HHKMGGRSAS GLEELIMGCT SSSTDIKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021655706.1	1e-129	uncharacterized protein LOC110646542
Refseq	XP_021655707.1	1e-129	uncharacterized protein LOC110646542
Swissprot	Q9M0F8	1e-116	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2H5PFX1	1e-132	A0A2H5PFX1_CITUN; Uncharacterized protein
STRING	EOY30594	1e-127	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-111	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]