PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054041.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 366aa    MW: 39826.5 Da    PI: 8.3844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054041.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000271133123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C  C+k+Fs+   L  H r+H
  EcC054041.10 11 YVCDFCNKRFSSGKGLGGHKRVH 33
                  9**************99999998 PP
2zf-C2H218.94e-067697223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C  Cgk+F++  +L  H+r+H
  EcC054041.10 76 TCLMCGKTFPSMKSLFGHMRSH 97
                  69*******************9 PP
3zf-C2H219.42.9e-06260282123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C+ksFs++  L  H+++H
  EcC054041.10 260 FKCNICNKSFSTHQALGGHMSSH 282
                   89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-6836No hitNo description
Gene3DG3DSA:3.30.160.602.9E-7835IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5311138IPR007087Zinc finger, C2H2
PfamPF139124.9E-81133IPR007087Zinc finger, C2H2
SMARTSM003550.0211133IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.07675102IPR007087Zinc finger, C2H2
SMARTSM003550.00497597IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.48E-107697No hitNo description
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
PfamPF139121.4E-67799IPR007087Zinc finger, C2H2
SuperFamilySSF576677.48E-10255282No hitNo description
PfamPF139127.3E-10259283IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.949260283IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-5260284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001260282IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006821Biological Processchloride transport
GO:0007165Biological Processsignal transduction
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0055085Biological Processtransmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005247Molecular Functionvoltage-gated chloride channel activity
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQGDVQLENP YVCDFCNKRF SSGKGLGGHK RVHTQASKRN HQFLHKNIHK PKFKKSGGVD  60
DAYLSKAKKS HDIDATCLMC GKTFPSMKSL FGHMRSHPDR EWRGIHPPAR SNHSMSVSDS  120
AGPCRVHDRA TVHPALPQST LGSLRQISSE ALLQSTSGRV TEGKGKGKGK GKGKMDEFQG  180
CDGDADDKGS THERSNEAES NCEDGEYKST QYQLELNILV EKGNIKKKRR KRLPRNLEAG  240
AEVACCINHS RKISKTPERF KCNICNKSFS THQALGGHMS SHTKVTIKKS RSGDDHKGSA  300
SADLEADERA VAAAATQEAE TDGGADAQCL GDSSGDGAPS VQALDCKMLV IDLNELPPMD  360
EDEQEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229KKKRR
2225230KKKRRK
3225231KKKRRKR
4226230KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010064659.11e-104(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-17C2H2 family protein