PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054060.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 257aa MW: 29289 Da PI: 9.5573

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054060.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.7	2.8e-33	23	163	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyW 83 lp+G++F+Ptd+el+ e+L+ kv+ + +l++ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + +W EcC054060.20 23 LPAGVKFDPTDQELL-EHLEGKVRPDARKLHRlidqfipTLQGEnGICYTHPEKLP-GVSKNGMIRHFFHRPSKAYTTGNRKRRKVHtdeeggETRW 117 799**********.99*99984443333343332343337******.555556677***************744456555778 PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+++v+ k el+g kk+Lv+y g+++k+ekt+Wvmh+y+l EcC054060.20 118 HKTGKTRPVFM-KAELKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 163 *********.999*******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-36	17	182	IPR003441	NAC domain
PROSITE profile	PS51005	32.164	23	182	IPR003441	NAC domain
Pfam	PF02365	1.7E-15	24	163	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006468	Biological Process	protein phosphorylation
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
TCPSCGHEFE IQDQTGIQEL PGLPAGVKFD PTDQELLEHL EGKVRPDARK LHRLIDQFIP 60 TLQGENGICY THPEKLPGVS KNGMIRHFFH RPSKAYTTGN RKRRKVHTDE EGGETRWHKT 120 GKTRPVFMKA ELKGYKKILV LYTNYGKQRK PEKTNWVMHQ YHLGNNEEEK EGELVVSKVF 180 YQTQPRQCGS LMKDSSSLKL NGPSGHENAN LKNNPALVEY YNSSYISFDQ GSQNRASSQH 240 QMIPRHFAVH GGSSFVS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035802.1	0.0	PREDICTED: NAC domain-containing protein 73
Swissprot	O49459	1e-117	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A059A1Q4	0.0	A0A059A1Q4_EUCGR; Uncharacterized protein
STRING	XP_010035802.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-106	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]