PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054094.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 207aa    MW: 22909.8 Da    PI: 5.6341
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054094.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.33.2e-08333434
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                  ++C+ +e+  +++fC  ++  lC+ C ++ H
  EcC054094.70  3 TICDVCENAAAIFFCAADEAALCRACDEKVH 33
                  68*******9******************998 PP
2zf-B_box26.51.4e-085291237
      zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                  e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  EcC054094.70 52 EVQRCDICENAPAFFYCEIDGSSLCLQCDMLVHVGgkrtH 91
                  779***************************9996544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.3E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
PfamPF006439.9E-7334IPR000315B-box-type zinc finger
CDDcd000212.73E-7345No hitNo description
SMARTSM003361.6E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1015196IPR000315B-box-type zinc finger
PfamPF006431.3E-65291IPR000315B-box-type zinc finger
CDDcd000212.52E-75584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006096Biological Processglycolytic process
GO:0007018Biological Processmicrotubule-based movement
GO:0005622Cellular Componentintracellular
GO:0003676Molecular Functionnucleic acid binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0004332Molecular Functionfructose-bisphosphate aldolase activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRTICDVCEN AAAIFFCAAD EAALCRACDE KVHLCNKLAS RHVRVGLADP SEVQRCDICE  60
NAPAFFYCEI DGSSLCLQCD MLVHVGGKRT HGRYLLLRQR VEFPGDKPGR LESQTPNQNE  120
VKREKDQPHK LAMKEVQQNH RASPVPVGDA SSSGEGKMQD EMIDLNSRPQ RTKGQTSMNE  180
DMDITNGSNL ESAGVVPVGS FDRQPEM
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028649.11e-153PREDICTED: B-box zinc finger protein 19 isoform X2
SwissprotC0SVM54e-84BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A059ANP01e-151A0A059ANP0_EUCGR; Uncharacterized protein
STRINGXP_010028649.11e-152(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-73DBB family protein