PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054130.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 438aa    MW: 49727.4 Da    PI: 5.0045
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054130.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71.1e-34141042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d++++ l+swse+g+sfvv+ + ef+ ++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+k+ll++i 
  EcC054130.30  14 FLVKTYEMVDDPQTDFLVSWSESGSSFVVWSPPEFSGELLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGEKHLLNNIY 101
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
  EcC054130.30 102 RRK 104
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-38597IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:3.30.830.109.2E-4137246IPR011237Peptidase M16 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDGSQGKSNA PAPFLVKTYE MVDDPQTDFL VSWSESGSSF VVWSPPEFSG ELLPKYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGEKHLLNNI YRRKPIHSHS GQGARLSDTE  120
KQMYEEEIKR LRHEKSSLQS ELQRYQGDNQ DVDFQIQLLR KQFQNMEQKQ THLITVLAQL  180
MQKPVFASLF TQQSDSPTKK RRLAELDHLH DSDDKSGLES LKFQKEKFNG VPFSLLDLDS  240
VEKLEQSLHL LENLLQGVDN TSGAEQHDFG AISLPWPAGF TERKESLDDS DRHIRPWSPG  300
SPPSPKDVAL SPELALGTDH LESPETSSVC LNMDISLKSS VIDVNMEPAC VPDVENLKEQ  360
ILEKMPGAPT AVNDVFWEQF LTEAPCASDS QEVESERREG SGSRSPMKLA NRGKFWWNSH  420
LGNDFTKHVG SLASEGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-27310319129Heat shock factor protein 1
5d5v_B3e-27310319129Heat shock factor protein 1
5d5v_D3e-27310319129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052968.10.0PREDICTED: heat stress transcription factor A-4b
TrEMBLA0A059DHG50.0A0A059DHG5_EUCGR; Uncharacterized protein
STRINGXP_010052968.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.12e-64HSF family protein