PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054144.150
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 265aa    MW: 29316.3 Da    PI: 5.6403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054144.150genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.8e-164796255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  EcC054144.150 47 RSKHSVTEQRRRSKINERFQILRDLIPNS----DQKRDTASFLLEVIEYVRYLQ 96
                   899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-2344118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1944118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3744595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-1447100No hitNo description
PfamPF000102.5E-134796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-1251101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0006508Biological Processproteolysis
GO:0006950Biological Processresponse to stress
GO:0015074Biological ProcessDNA integration
GO:0045454Biological Processcell redox homeostasis
GO:0003676Molecular Functionnucleic acid binding
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0005524Molecular FunctionATP binding
GO:0008146Molecular Functionsulfotransferase activity
GO:0009055Molecular Functionelectron carrier activity
GO:0015035Molecular Functionprotein disulfide oxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0051082Molecular Functionunfolded protein binding
GO:0051499Molecular FunctionD-aminoacyl-tRNA deacylase activity
GO:0070008Molecular Functionserine-type exopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MRSGKGSQEY EDFEEEDLNS KRDGPSSNVS NSSNSANKSS DKAHAIRSKH SVTEQRRRSK  60
INERFQILRD LIPNSDQKRD TASFLLEVIE YVRYLQEKVH KYEDSYQGWS SEPTKLMPWQ  120
SEVVKQAMHV AVPVPVSVRS DDVISNHLQR PFPDAQPMEC TADTASDQQE DLTIEGGTIS  180
ISSVYSQGLL NSLTNALQTA GVDLSQARIS VQIDLGKQAN RGGLATGTSI PMDHGSPNPG  240
NSTMAHVTDA RGEEGLDQVQ KRQKT
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044357.11e-153PREDICTED: transcription factor BIM2 isoform X2
SwissprotQ9CAA47e-84BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A059D7T81e-151A0A059D7T8_EUCGR; Uncharacterized protein
STRINGXP_010044355.11e-98(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-57BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]