PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054168.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 175aa    MW: 19021.1 Da    PI: 9.8008
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054168.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0005895117123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  F+    L  H+r+H
  EcC054168.10  95 HECSICGLDFPMGQALGGHMRRH 117
                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.44E-844117No hitNo description
PfamPF139121.4E-114670IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0554673IPR007087Zinc finger, C2H2
SMARTSM003550.464668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139123.7E-1195119IPR007087Zinc finger, C2H2
SMARTSM003550.3295117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.80895117IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVKRDREDTE VEALARANCL MLLSRVGEST DSASPDRKSR PTERMFACKT CNREFSSFQA  60
LGGHKASHKK PKLISGDLFH LGHAADSSPP KPKKHECSIC GLDFPMGQAL GGHMRRHRAA  120
MLESLAAAAA NPVPVLKKSN SKRVTGLDLN SLPMEDDLTL RLGKVAPPLV LDLVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043583.11e-118PREDICTED: zinc finger protein ZAT8
TrEMBLA0A059D4D01e-116A0A059D4D0_EUCGR; Uncharacterized protein (Fragment)
TrEMBLA0A059D5V81e-116A0A059D5V8_EUCGR; Uncharacterized protein
STRINGXP_010043583.11e-118(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-37C2H2 family protein