PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054168.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 175aa    MW: 19009.2 Da    PI: 10.4058
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054168.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124668123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  +kC+ C++ Fs++  L  H  +H
  EcC054168.20 46 FKCKTCNREFSSSQALGGHRASH 68
                  89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-44270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.87E-844117No hitNo description
PROSITE profilePS5015710.7624673IPR007087Zinc finger, C2H2
SMARTSM003550.094668IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-104670IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM003550.2795117IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-1095119IPR007087Zinc finger, C2H2
PROSITE profilePS501578.66395117IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVKRDREDAG VEALARANCL MLLSQVGEST NSSSPNHKSR PTERMFKCKT CNREFSSSQA  60
LGGHRASHKK PKLISGDLLH LGHAAYSSPP KPKKHECSIC GLEFPIGQAL GGHMRRHRAA  120
MLESLAGVAT KPVPVLKKSN SKRVMGLDLN SLPMEDDLTL RLGKVAPPLV LDLVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043584.11e-122PREDICTED: zinc finger protein ZAT11
TrEMBLA0A059D5B51e-118A0A059D5B5_EUCGR; Uncharacterized protein
STRINGXP_010043584.11e-121(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-40C2H2 family protein