PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054175.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WOX

Protein Properties

Length: 270aa MW: 30090 Da PI: 6.254

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054175.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.1e-21	84	144	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F++ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ EcC054175.10 84 RQRWTPTPIQLQILERIFNEgNGTPSKQKIKEITTELsqhgQISETNVYNWFQNRRARSKR 144 89***************99************************************97 PP
2	Wus_type_Homeobox	101.3	7.2e-33	83	145	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++k EcC054175.10 83 ARQRWTPTPIQLQILERIFNEGNGTPSKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRK 145 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-18	79	149	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.094	80	145	IPR001356	Homeobox domain
SMART	SM00389	1.9E-14	82	149	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-19	83	148	IPR009057	Homeodomain-like
Pfam	PF00046	3.5E-19	84	144	IPR001356	Homeobox domain
CDD	cd00086	1.71E-14	84	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MNTLXXXXXX XAAGNGGGVL YVKVMTDEQL ETLRKQIAVY ASICEQLVEM HKNLTAQQDL 60 AGVRLGNLYC DPLMTTGGHK ITARQRWTPT PIQLQILERI FNEGNGTPSK QKIKEITTEL 120 SQHGQISETN VYNWFQNRRA RSKRKMQNAT GNNTESEAEA EVESPKEMKT KPEIFQSQQN 180 PVSRNEDLCF QSPEISSDLH FADSQTKVES MVFSDGSLRS RNRNLGQLTF YDAMMSNSGG 240 LAGNEHLGGK MEVPGAYGLY HSAEDFGMSG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029579.1	0.0	PREDICTED: WUSCHEL-related homeobox 8 isoform X1
Swissprot	Q5QMM3	1e-89	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0D3L7P4	0.0	A0A0D3L7P4_EUCGR; WOX3.1
STRING	XP_010029579.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-90	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]