PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054212.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 257aa    MW: 28835.2 Da    PI: 6.5486
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054212.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94.1e-5361331128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhPtdeelv +yLk+k+eg  +el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++ 
  EcC054212.20   6 LPPGFRFHPTDEELVGYYLKRKTEGLGFEL-EVIPVIDLYKFDPWELPeKsFLPNRDMEWFFFCPRDRKYPNGSRSNRATKAGYWKATGKDRKVVC- 100
                   79****************************.99**************95334556888**************************************. PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++++g +ktLvfy+grap g +tdWvmheyrl
  EcC054212.20 101 QSSVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                   9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-614156IPR003441NAC domain
PROSITE profilePS5100557.9646156IPR003441NAC domain
PfamPF023652.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLKRKTEG LGFELEVIPV IDLYKFDPWE LPEKSFLPNR  60
DMEWFFFCPR DRKYPNGSRS NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLSDELPQG SLGSQGAFAL CRVIKKNEQG SKTSDSNGEP KGKRVGSYLS  180
PVDITSINIS SDIPSTSNDI SSQNSGLYDE SRNSSPAPPP EIVEIADSEP ASMENNLASI  240
WVWPDPSFDS SKRTKLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-54516216171NO APICAL MERISTEM PROTEIN
1ut4_B7e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_A7e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_B7e-54516216171NO APICAL MERISTEM PROTEIN
4dul_A7e-54516216171NAC domain-containing protein 19
4dul_B7e-54516216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053592.11e-177PREDICTED: NAC domain-containing protein 86
SwissprotO496973e-93NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A059CIF91e-176A0A059CIF9_EUCGR; Uncharacterized protein
STRINGXP_010053592.11e-177(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-95NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]