PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054212.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LSD
Protein Properties Length: 135aa    MW: 14871.2 Da    PI: 9.0197
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054212.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1474.3e-15832125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  CggC+tlL+Y rGA+sV+C++C+tV
  EcC054212.60  8 CGGCHTLLMYIRGATSVQCSCCHTV 32
                  ************************9 PP
2zf-LSD1421.5e-134670125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  Cg+Cr lL+Y +GA+sV+Ca+C++V
  EcC054212.60 46 CGNCRMLLMYQYGARSVKCAVCNFV 70
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.7E-15534IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-12832IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.5E-124373IPR005735Zinc finger, LSD1-type
PfamPF069439.1E-134670IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR  60
SVKCAVCNFV TSVGVSLIFL LRQAHWNRSS PARISNKPTG HRPHKSWLED FYSTAAAAAT  120
AHQHHERKQG KSLLV
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019445973.12e-49PREDICTED: protein LOL1 isoform X1
RefseqXP_019445974.11e-49PREDICTED: protein LOL1 isoform X2
SwissprotQ0J7V92e-48LSD1_ORYSJ; Protein LSD1
TrEMBLA0A371GF987e-48A0A371GF98_MUCPR; Protein LOL1 (Fragment)
STRINGXP_008373559.11e-48(Malus domestica)
STRINGXP_004300252.12e-48(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-49lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]