PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054232.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 199aa    MW: 21940.9 Da    PI: 7.1448
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054232.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS200.69.3e-623199178374
          GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                   fn+ v++++++l+ ++L ++p+E+laVnl+++l+r++desvs+e++rde+L+ vk+l P+vv++veqe++ n+++F++r  eal yy al++sle++
  EcC054232.70   3 FNI-VSQKVSELSRDSLGCEPDEVLAVNLAFKLYRMPDESVSVENPRDELLRRVKGLAPRVVTLVEQEMNGNTAPFATRAGEALGYYGALLESLEST 98 
                   898.799****************************************************************************************** PP

          GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvs 369
                   +pr+s er+  E+  l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  pl++++a++ k+ l+  +  + g++v+ee+g +++gW +r+L++
  EcC054232.70  99 VPRDSPERARAEEG-LSRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLGQHVAESLKARLESGNrvNPGFTVKEENGGVCFGWLGRTLTV 194
                   **************.****************************************************98877789********************** PP

          GRAS 370 vSaWr 374
                   +SaWr
  EcC054232.70 195 ASAWR 199
                   ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.2951177IPR005202Transcription factor GRAS
PfamPF035143.2E-593199IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006433Biological Processprolyl-tRNA aminoacylation
GO:0055085Biological Processtransmembrane transport
GO:0055114Biological Processoxidation-reduction process
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0004827Molecular Functionproline-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
LVFNIVSQKV SELSRDSLGC EPDEVLAVNL AFKLYRMPDE SVSVENPRDE LLRRVKGLAP  60
RVVTLVEQEM NGNTAPFATR AGEALGYYGA LLESLESTVP RDSPERARAE EGLSRKLGNS  120
VACEGRDRVE RCEVFGKWRA RMGMAGFELK PLGQHVAESL KARLESGNRV NPGFTVKEEN  180
GGVCFGWLGR TLTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-253199180375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060571.11e-135PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-97SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DIP41e-133A0A059DIP4_EUCGR; Uncharacterized protein
STRINGXP_010060571.11e-134(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-100SCARECROW-like 8