PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054233.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 360aa    MW: 41329.4 Da    PI: 7.1886
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054233.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.52.7e-2652131286
      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   W ++e+++Li++rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k+ykk k ++++     s +++y++++e
  EcC054233.50  52 WVQDETRCLIALRREMDSLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEYKKAKYQDRG-----SAKMSYYKEIE 131
                   ******************************************************************998.....46788999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-542114IPR009057Homeodomain-like
PROSITE profilePS500908.45544108IPR017877Myb-like domain
SMARTSM007177.9E-648110IPR001005SANT/Myb domain
CDDcd122037.57E-2950115No hitNo description
PfamPF138372.0E-2051133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0006508Biological Processproteolysis
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membrane
GO:0006633Biological Processfatty acid biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0005739Cellular Componentmitochondrion
GO:0048500Cellular Componentsignal recognition particle
GO:0003677Molecular FunctionDNA binding
GO:0003887Molecular FunctionDNA-directed DNA polymerase activity
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0004316Molecular Function3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0005515Molecular Functionprotein binding
GO:0008312Molecular Function7S RNA binding
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
QHQHPHQHPH QHQAPPAPPP PPPPQPPHQM ILGESSGEDL EVKAPKKRAE TWVQDETRCL  60
IALRREMDSL FNTSKSNKHL WEQISSKMRE KGFDRSPTMC TDKWRNLLKE YKKAKYQDRG  120
SAKMSYYKEI EEILRERSKH NQYKSPTASA LKVDPYMQFS DKGIEDAGMT FGPVEASGRP  180
TLNLERRLDH DGHPLAITTA EAVAANGVPP WNWRETPGNG ESQSYGGRVI SVKWGDYTRR  240
VGIDGTADSI KEAIKSAFRL RTKRAFWLED EDQVIRSLDR DMPLGNYTLQ LDEGLAIKVC  300
LYDESGHISV HPEDKIFYTE DDYRDFLARR GWTCLRELDG YRNIDNMDDL RPGGIYRGVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A5e-4646129186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044755.10.0PREDICTED: trihelix transcription factor GT-1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A059D8Y40.0A0A059D8Y4_EUCGR; Uncharacterized protein
STRINGXP_010044755.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]