PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054247.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 472aa    MW: 52534 Da    PI: 7.7595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054247.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13291338254
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r +h e+Er+RR++++++f  Lr+++Pk      +K++Ka+ L  Av YIk+L
  EcC054247.30 291 RLNHVEAERQRREKLKQGFYALRSVVPKV-----TKMDKASLLSDAVSYIKEL 338
                   789*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-3624200IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.07E-18289357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.18289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16291349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-14291339No hitNo description
PfamPF000103.2E-11291338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-16295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00126414472No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAEITSSASS SSLVPLPKET SLNLQQYFHF LLQIRPDDWV YSIFWQPSRD DRGCPVLIWG  60
DGQFRGMKDL TPKNSTNQRV FKEVGTLGSA GFNTSSNMDT KLVQKEVSDL ERYYIVSATR  120
SYSFEESILG WALCSGTHIW LCGEDELGIY ECERVREART TGIKSIVCIS TPCDTGVLEL  180
ASTKRLYEDW SLVHLAKSLF TSHFLSTGIT PHVHEEHQSN GVPKEACSAL DGTGTSRSDT  240
CPSETYGLLG SKRDLKRVGV SQNITSSNKS ATIAKMERDE TEIARLPSPL RLNHVEAERQ  300
RREKLKQGFY ALRSVVPKVT KMDKASLLSD AVSYIKELRS RIDELEGELK FPPPKIGLSK  360
VAGRFGDKTE PISPVSKIGS SPWLNVVKGL SKMEVGLKVV GDEAVVWVRS PNWDHPAARL  420
MGALKELQLE VHHASMSSVK EMMLQDVVIR TPIGWASEES LRDAILARLC KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-19172012193Transcription factor MYC3
4rqw_B3e-19172012193Transcription factor MYC3
4rs9_A3e-19172012193Transcription factor MYC3
4yz6_A3e-19172012193Transcription factor MYC3
5gnj_A2e-19292348763Transcription factor MYC2
5gnj_B2e-19292348763Transcription factor MYC2
5gnj_E2e-19292348763Transcription factor MYC2
5gnj_F2e-19292348763Transcription factor MYC2
5gnj_G2e-19292348763Transcription factor MYC2
5gnj_I2e-19292348763Transcription factor MYC2
5gnj_M2e-19292348763Transcription factor MYC2
5gnj_N2e-19292348763Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058363.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A059C2V80.0A0A059C2V8_EUCGR; Uncharacterized protein
STRINGXP_010058363.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-59bHLH family protein