PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054257.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 335aa    MW: 37467.6 Da    PI: 5.8521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054257.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.8e-083302048
                     TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48
                     G g+W + ++++g++R++k+c++rw++yl
     EcC054257.10  3 G-GNWIALPQKIGLNRCGKSCRLRWLNYL 30
                     3.46***********************97 PP
2Myb_DNA-binding37.94.1e-123779246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +++eEd l+  +    G++ W+ Ia+ ++ gRt++++k++w++
     EcC054257.10 37 GGFSEEEDNLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 79
                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.044130IPR017930Myb domain
PfamPF002496.3E-6330IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-14337IPR009057Homeodomain-like
SuperFamilySSF466894.94E-211685IPR009057Homeodomain-like
PROSITE profilePS5129421.2923185IPR017930Myb domain
SMARTSM007177.1E-113583IPR001005SANT/Myb domain
PfamPF002496.9E-113779IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-223885IPR009057Homeodomain-like
CDDcd001671.54E-83981No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
GTGGNWIALP QKIGLNRCGK SCRLRWLNYL RPNIRHGGFS EEEDNLICSL YISIGSRWSI  60
IAAQLPGRTD NDIKNYWNTK LKKKLLGRRR ESLLHRSSSM KDAHSSKDAT SSQALSNSAL  120
ERLQLHMQLQ NLQSPFSFYN NPALWPKVPP LLHEKMTQSL QILNESPYQL MQPTLSSSSS  180
PKNDQKAETH ESSPAASHSA PSDFANLSFN DADFSELVNS MTNCVSSSDR YVSLPDIGVN  240
SIDQPNGTQF LPDPIIHTEL DNSLNCNKSD GSMSQQNQVD EFCFKDMNST SRDPLQDLWC  300
DNEYSGQSAS SYCWDSTSAL LCEGISQDYG FGYNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-18178540108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050986.10.0PREDICTED: transcription factor MYB36
TrEMBLA0A059CRN10.0A0A059CRN1_EUCGR; Uncharacterized protein
STRINGXP_010050986.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-71myb domain protein 36