PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054295.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 318aa    MW: 34872.4 Da    PI: 5.2553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054295.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.5e-052893081029
                   HHHHHHHHHHHHHHHCTSCC CS
           HLH  10 rrRRdriNsafeeLrellPk 29 
                   r+RR+riN+++  L+ l+P+
  EcC054295.10 289 RKRRERINERLRMLQNLVPN 308
                   9******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.712279318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-6279317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-5284317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-5288318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
METFGANSEV EWGSISGMYF TEESDLMAQW FDKCSLPAEL YAGSHFALHS AYLPTYESFN  60
LAGVDGSAFC TSDTLYPNSH SSSPHDEFHS SVSSFLFPSS GDSNYHLSDL NPILVTSSSS  120
LCNELSMSNL RQTGSCLIEG DNSPNREMSE VDESHGSPRE MAFPENSLQL KWGSEILPVI  180
SAAKDDKDDS NDSSRKRSRN LGEKNKRSVR LRKDLKLDCP RKSHEEAKGC TGGQISSTCF  240
SEDDSSSSLE LSRGAASSMS PKEAASLSPN GKTRASRGSA TDPQSLYARK RRERINERLR  300
MLQNLVPNGT KVDISTML
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028365.10.0PREDICTED: transcription factor bHLH84
TrEMBLA0A059ANW80.0A0A059ANW8_EUCGR; Uncharacterized protein
STRINGXP_010028365.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.19e-16ROOT HAIR DEFECTIVE 6-LIKE 2