PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054296.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 340aa    MW: 37526.3 Da    PI: 9.4942
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054296.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19198231134
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                   Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  EcC054296.10 198 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 231
                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-13191232No hitNo description
SMARTSM004019.7E-20192243IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.756192228IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15196231IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.55E-14197229No hitNo description
PfamPF003204.8E-17198231IPR000679Zinc finger, GATA-type
PROSITE patternPS003440198223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005773Cellular Componentvacuole
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MNSANYHIIP PSRLVLDLNE DHQSHELFLM SPPKSEASSS SSFPLSSPSP IFYNLLGQDH  60
QGGSCKYEDH HPLEKLQHPQ EVDHKPVSQG ESHGGHGLNI TLWKKEEGGV RDESDQVDKY  120
YSVKWMSSKM RIMKKMMSSD HREQSQDNTP MMTSGSISAG GDHKLFVEDH KRLPSSSSLE  180
TDSSSNSSSY DTNPIRVCSD CNTTKTPLWR SGPRGPKSLC NACGIRQRKA RRAMAAAAAA  240
AAAADSGDLP PATTLTPKSK LKQHKNKRSS RATVCGQESI KTKRKEKPHK NHASVGGRKL  300
CLEEFAIRLS KHLAFQRVFP QEEKEAAILL MALSYGLVPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049743.10.0PREDICTED: GATA transcription factor 21
TrEMBLA0A059CVL60.0A0A059CVL6_EUCGR; Uncharacterized protein
STRINGXP_010049743.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-29cytokinin-responsive gata factor 1