PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054371.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 224aa    MW: 25251.1 Da    PI: 4.5892
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054371.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-18550348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd ll+++++q+G g W+++++  g++R++k+c++rw++yl
     EcC054371.50  5 AWTEEEDHLLKRCIEQYGEGKWHRVPQLAGLNRCRKSCRLRWLNYL 50
                     7*******************************************97 PP
2Myb_DNA-binding27.76.3e-095693147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg++T+eE +l+++++ +lG++        ++ gRt++++k++w+ +
     EcC054371.50 56 RGSFTEEEVDLIIQLHSLLGNR--------LP-GRTANDVKNYWNCH 93
                     89******************99........**.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.538154IPR017930Myb domain
SMARTSM007171.5E-13252IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-23590IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-23557IPR009057Homeodomain-like
PfamPF002492.7E-16550IPR001005SANT/Myb domain
CDDcd001675.38E-12550No hitNo description
PROSITE profilePS5129413.9875598IPR017930Myb domain
SMARTSM007175.1E-75596IPR001005SANT/Myb domain
PfamPF002493.2E-75691IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-155898IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006855Biological Processdrug transmembrane transport
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0015074Biological ProcessDNA integration
GO:0005840Cellular Componentribosome
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005525Molecular FunctionGTP binding
GO:0008270Molecular Functionzinc ion binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
GO:0019843Molecular FunctionrRNA binding
GO:0030145Molecular Functionmanganese ion binding
GO:0045735Molecular Functionnutrient reservoir activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKRCIEQ YGEGKWHRVP QLAGLNRCRK SCRLRWLNYL RPDIKRGSFT  60
EEEVDLIIQL HSLLGNRLPG RTANDVKNYW NCHLSKKLDP QQISNHEDND LNTKDDIKIL  120
CPSQPRDFAA SSGGWTQPTT VALTAPSSAH GPMPEEIGTS PSPPPKLYAD QDELNNSNPP  180
FFEEDGHVLG DLGMDLQFDG SAGLMQSSNQ WDWDDLISDL DLWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-2069910109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027133.11e-161PREDICTED: transcription factor MYB113
SwissprotQ9FNV94e-45MY113_ARATH; Transcription factor MYB113
TrEMBLA0A059B6071e-160A0A059B607_EUCGR; Uncharacterized protein
STRINGXP_010027133.11e-161(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-48myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]