PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054376.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 143aa    MW: 16533.7 Da    PI: 8.4595
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054376.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.22.3e-2161303127
           NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                   pGf F+Ptd+el ++yL +++++++l+  + i+++d+y   ePw++    k +  + y F+  +k   + +r  r++ sg Wk   +  e  + ++ 
  EcC054376.20   6 PGFCFQPTDQELFSDYLMRRLNEEPLPDPNLIRDCDVYGGgEPWKIFD--KDRGGKFYVFTVLKK---NRSRVDRTAGSGAWKGEQS-YEFRDLQDD 96 
                   9************************999999*******866*****62..234457788887766...4579***********7766.445555889 PP

           NAM  99 lvglkktLvfy.....kgrapkgektdWvmheyr 127
                   ++g kk ++f      + +a k+e+ +W+m ey+
  EcC054376.20  97 VIGHKKLFTFKpkagsSVKADKAENGHWIMYEYS 130
                   9**********9877667999999*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.4694143IPR003441NAC domain
SuperFamilySSF1019418.37E-215131IPR003441NAC domain
PfamPF023651.0E-156130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MATRHPGFCF QPTDQELFSD YLMRRLNEEP LPDPNLIRDC DVYGGGEPWK IFDKDRGGKF  60
YVFTVLKKNR SRVDRTAGSG AWKGEQSYEF RDLQDDVIGH KKLFTFKPKA GSSVKADKAE  120
NGHWIMYEYS KHPCNVSVSF PFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058231.16e-88PREDICTED: NAC domain-containing protein 72-like
STRINGXP_010058231.12e-87(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-13NAC domain containing protein 38