PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054379.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 109aa    MW: 12699.8 Da    PI: 10.1126
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054379.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.12.1e-32959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  EcC054379.50  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                  79***********************************************96 PP
2K-box16.73e-0781109836
         K-box   8 sleeakaeslqqelakLkkeienLqreqR 36 
                   + + +++++++q++ kLk+++e Lqr+qR
  EcC054379.50  81 NCSINEMQNSYQDYLKLKARVEVLQRSQR 109
                   477899*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.726161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-42160IPR002100Transcription factor, MADS-box
CDDcd002651.12E-43278No hitNo description
SuperFamilySSF554552.35E-35281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-34323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-342338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-343859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010215Biological Processcellulose microfibril organization
GO:0016049Biological Processcell growth
GO:0030244Biological Processcellulose biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0031225Cellular Componentanchored component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
GO:0016866Molecular Functionintramolecular transferase activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0051499Molecular FunctionD-aminoacyl-tRNA deacylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMMKTIEKY QKCSYGSLET NCSINEMQNS YQDYLKLKAR VEVLQRSQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-21174173MEF2 CHIMERA
6byy_B4e-21174173MEF2 CHIMERA
6byy_C4e-21174173MEF2 CHIMERA
6byy_D4e-21174173MEF2 CHIMERA
6bz1_A4e-21174173MEF2 CHIMERA
6bz1_B4e-21174173MEF2 CHIMERA
6bz1_C4e-21174173MEF2 CHIMERA
6bz1_D4e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289642.16e-74developmental protein SEPALLATA 1-like
SwissprotQ7Y0402e-63EJ2_SOLLC; MADS-box protein EJ2
TrEMBLO649351e-72O64935_EUCGR; MADS box protein
STRINGXP_010037259.12e-72(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]