PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054500.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family RAV
Protein Properties Length: 364aa    MW: 39771 Da    PI: 9.5829
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054500.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.34e-1365113155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa a++ a+++++g
  EcC054500.60  65 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAMAYDVAAQRFRG 113
                   89****9888.8*********3.....5**********99************998 PP
2B398.44.6e-31197302199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+ tpsdv+k++rlv+pk++ae+h       ++ + ++  l ++d+ g++W+++++y+++s++yvlt+GW++Fvk++gL +gD+v F+ +   e+
  EcC054500.60 197 FEKAVTPSDVGKLNRLVIPKQHAEKHfplrngtSSATSKGLLLNFQDSGGKVWRFRYSYWNSSQSYVLTRGWSRFVKEKGLTAGDIVSFHQSAGPEK 293
                   89****************************988666678899************************************************7766888 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l ++ +r+
  EcC054500.60 294 QLQIGYRRR 302
                   899998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.6E-965113IPR001471AP2/ERF domain
CDDcd000188.30E-2565120No hitNo description
SuperFamilySSF541712.94E-1765121IPR016177DNA-binding domain
SMARTSM003801.7E-2866127IPR001471AP2/ERF domain
PROSITE profilePS5103219.62566121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-2066122IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-37194302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-29195298IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-27196286No hitNo description
SMARTSM010193.7E-24197303IPR003340B3 DNA binding domain
PfamPF023625.8E-28197302IPR003340B3 DNA binding domain
PROSITE profilePS5086314.48197303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016853Molecular Functionisomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDGNSSCIDE LSSTSDSVCV PPPSKSSPPP LPPPPQSLCR HGSGTSVIVD SEGCVEAESR  60
KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA AMAYDVAAQR FRGGDAVTNF  120
KRKSEGEDYD LEAAFLSAHS KPEIVDMLRK HTYRDELEQS KRKCLNSNGG GKRASMTEAL  180
GDLSSPGGIA MVRQLLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLRNGTS SATSKGLLLN  240
FQDSGGKVWR FRYSYWNSSQ SYVLTRGWSR FVKEKGLTAG DIVSFHQSAG PEKQLQIGYR  300
RRSSLGGSGP VLPVQMVRLF GVNIFKVSAA GGGDDTGDWS GKRMREVELL SLGCNKKQMV  360
IGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5219431011127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044293.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1
SwissprotQ9C6M51e-142RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A059D7A50.0A0A059D7A5_EUCGR; Uncharacterized protein
STRINGXP_010044293.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-140RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]