PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054519.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 312aa MW: 35600.3 Da PI: 7.0855

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054519.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.9	5e-50	28	155	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 pGfrFhPtdeelv +yLk+kve+k+l++ e ik+vdiyk++PwdLpk + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++++ EcC054519.20 28 LPGFRFHPTDEELVAFYLKRKVENKPLSI-ELIKHVDIYKYDPWDLPKVSTIGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKQIHAAkeP 123 59*************************.89***********8777899**********************************97433 PP NAM 97 gel..vglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lv+y g+a kg+ktdW+mhe+rl EcC054519.20 124 --HdcIGLKKSLVYYCGSAGKGTKTDWMMHEFRL 155 ..255*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.887	27	187	IPR003441	NAC domain
SuperFamily	SSF101941	1.29E-54	28	186	IPR003441	NAC domain
Pfam	PF02365	6.1E-26	29	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0016765	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEIMQKKSIS ECSGERIMED EDGGGTALPG FRFHPTDEEL VAFYLKRKVE NKPLSIELIK 60 HVDIYKYDPW DLPKVSTIGE KEWYFFCMRG RKYRNSVRPN RVTGSGFWKA TGIDKQIHAA 120 KEPHDCIGLK KSLVYYCGSA GKGTKTDWMM HEFRLPPSGK TAHDSLPSDK SIAQEAEVWT 180 LCRIFKRIPS HRKYTPNLKE HNTNLKQNPT DSSSNTSSFE TESAEQYVSF GDSAVVAHNE 240 MKPVILDRFD DRNYLLFAQL NSISQAPLAA PGYSGLWNLH GEDLLMHGNC WDELRSVVER 300 VAIDPCQAFD QR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	29	193	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	29	193	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	29	193	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	29	193	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	29	193	22	174	NAC domain-containing protein 19
3swm_B	2e-51	29	193	22	174	NAC domain-containing protein 19
3swm_C	2e-51	29	193	22	174	NAC domain-containing protein 19
3swm_D	2e-51	29	193	22	174	NAC domain-containing protein 19
3swp_A	2e-51	29	193	22	174	NAC domain-containing protein 19
3swp_B	2e-51	29	193	22	174	NAC domain-containing protein 19
3swp_C	2e-51	29	193	22	174	NAC domain-containing protein 19
3swp_D	2e-51	29	193	22	174	NAC domain-containing protein 19
4dul_A	2e-51	29	193	19	171	NAC domain-containing protein 19
4dul_B	2e-51	29	193	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010053974.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	6e-95	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A059DH21	0.0	A0A059DH21_EUCGR; Uncharacterized protein
STRING	XP_010053974.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-93	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]