PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054522.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 111aa MW: 12336.1 Da PI: 7.8517

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054522.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.7	3.4e-42	1	97	2	98
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 CaaCk+lrr+C +dC +apyfpa++p+kf nvhk+FGasnv k+l++lpe++r +++sslvyeA+ar+rdPv+G+vg i++lq+ql+ + ae+++l+ EcC054522.20 1 CAACKLLRRRCMQDCLFAPYFPASEPHKFTNVHKVFGASNVNKMLQDLPEDQRANTVSSLVYEANARVRDPVNGCVGEITALQSQLADKIAEVERLQ 97 ****************************************************************************************999998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.954	1	100	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-41	1	96	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding
GO:0016757	Molecular Function	transferase activity, transferring glycosyl groups

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
CAACKLLRRR CMQDCLFAPY FPASEPHKFT NVHKVFGASN VNKMLQDLPE DQRANTVSSL 60 VYEANARVRD PVNGCVGEIT ALQSQLADKI AEVERLQVLL EAEKSNRSPS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-40	1	105	12	109	LOB family transfactor Ramosa2.1
5ly0_B	3e-40	1	105	12	109	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056712.1	6e-78	PREDICTED: LOB domain-containing protein 4
Refseq	XP_010058105.1	6e-78	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	9e-46	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A059C5K5	1e-76	A0A059C5K5_EUCGR; Uncharacterized protein
STRING	XP_010056712.1	2e-77	(Eucalyptus grandis)
STRING	XP_010058105.1	2e-77	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-48	LOB domain-containing protein 4