PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054570.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 355aa    MW: 39776.4 Da    PI: 7.2351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054570.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33208265259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnhe
  EcC054570.60 208 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHE 265
                   8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-35192267IPR003657WRKY domain
SuperFamilySSF1182901.96E-29200267IPR003657WRKY domain
PROSITE profilePS5081132.282202267IPR003657WRKY domain
SMARTSM007742.4E-39207266IPR003657WRKY domain
PfamPF031062.6E-26208265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005267Molecular Functionpotassium channel activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
FLLVLFVSVK FLFLIFFLLG MSDDKNNDPF NYNPFYTPDN IGVVSPPEFR FFDDDSTNLS  60
MFTHHQQAPH NPQALNPSPF MSFTGCLRSS VDYNTLSRAF DLSCSSSEVI TPNLDEGGSS  120
KKCSITEPAA TASENGPLSP NSSVSSSSKE AAVEEDGDNS KKDEDDPKTT CNDDDDKSKK  180
GNKPKKKEKR PREPRFAFLT KSEIDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTTQKCTV  240
KKRVERSFQD PSIVITTYEG QHNHECPANL RGNAAAAAAI LSPSFFASPS AIGTTFPHNL  300
LLPQFLQMRN PSRANSSNSM MFYPQTLAPQ QQQFQPPDHG LLHDMLNSVV QKKEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-282002681078Probable WRKY transcription factor 4
2lex_A1e-282002681078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035922.10.0PREDICTED: probable WRKY transcription factor 71
RefseqXP_018720202.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ29e-57WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A059A0X40.0A0A059A0X4_EUCGR; Uncharacterized protein
STRINGXP_010035922.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-49WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]