PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054588.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 383aa    MW: 42697.9 Da    PI: 8.4221
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054588.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.7e-5381421128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtdeel+ +yL++kv++++l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk ++++  
  EcC054588.60   8 LPPGFRFHPTDEELILHYLRRKVTSSPLPV-SIIAEVDIYKLNPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKVIVTSss 103
                   79****************************.89***************988899***************************************9988 PP

           NAM  96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++e+ g+kk Lvfykg+ pkg kt+W+mheyrl
  EcC054588.60 104 sasahqHHEKLGVKKALVFYKGKPPKGIKTNWIMHEYRL 142
                   8877766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-635177IPR003441NAC domain
PROSITE profilePS5100560.6118177IPR003441NAC domain
PfamPF023651.2E-279142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MKNPQSSLPP GFRFHPTDEE LILHYLRRKV TSSPLPVSII AEVDIYKLNP WELPAKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIVT SSSSASAHQH HEKLGVKKAL  120
VFYKGKPPKG IKTNWIMHEY RLAESPAYNS RPNTNPLKLK DSSMRLDDWV LCRIYKKTNL  180
SPTAGASVAT PDQDLEEEEE EVLSNIHQNE MLKPFADIPN NHVQNNGGLM SQKSSSFSNL  240
VDALDYSVLG SLLSDNTPQG VGVLGFDQLA PLIPNNSNHV DITDPHVFGS GTYNNGSSNC  300
FPQKLPQLSP SSSAPFMEEN RLKRHRSDAD TAAYQAKKLL SHCSFTNTAS QAADFPQYNL  360
INSYPFLNQQ LLLGHNNYGH FHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-72517714165NO APICAL MERISTEM PROTEIN
1ut4_B9e-72517714165NO APICAL MERISTEM PROTEIN
1ut7_A9e-72517714165NO APICAL MERISTEM PROTEIN
1ut7_B9e-72517714165NO APICAL MERISTEM PROTEIN
4dul_A9e-72517714165NAC domain-containing protein 19
4dul_B9e-72517714165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054307.10.0PREDICTED: NAC transcription factor 25
SwissprotQ84TD61e-107NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A059DHW20.0A0A059DHW2_EUCGR; Uncharacterized protein
STRINGXP_010054307.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-102NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]