PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054606.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 268aa    MW: 28630.7 Da    PI: 4.207
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054606.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-06444539
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  +C+ ++e++   +C+++  +lC +C  + H+       H++
  EcC054606.10  4 ICEFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                  7*****************************65677777776 PP
2zf-B_box19.71.8e-064689441
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                    C++++++++   C + ++ lC++C   +H g       H++++
  EcC054606.10 46 LLCERCNSQPACVRCAEERVSLCQNCDWIGH-GastsasaHKRQT 89
                  57***************************9*.5588888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.755147IPR000315B-box-type zinc finger
CDDcd000217.21E-7447No hitNo description
SMARTSM003363.6E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9164390IPR000315B-box-type zinc finger
CDDcd000217.14E-44790No hitNo description
SMARTSM0033634890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGYICEFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPACVRC  60
AEERVSLCQN CDWIGHGAST SASAHKRQTL NCYSGCPSAA ELSSIWSFVL DYPSGGESAC  120
EKGMGLMSIA EGNENAACIP PKDSSSQDVS VCADDEAGNA NAWVGSSSLP EHKSASLNMG  180
QLAASASTAT PKACLPITRS PGLFEDDRFY EDFNMDEVDL DLENYDELFG VALTNSELLF  240
ENGGIDSLFG AKEMSAADSN CQGPVVAE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048289.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_018729416.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA92e-86COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A059DE800.0A0A059DE80_EUCGR; Uncharacterized protein
STRINGXP_010048289.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-89B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]