PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054610.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 195aa    MW: 22572.6 Da    PI: 8.7839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054610.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.91.3e-4241381128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                   lppGfrF Pt+eelv++yL++k+eg++      +++vi+ vdiy+++P+dLp+     + ++ ++w+fF++r++++ +g r++r t++gyWkatg+ 
  EcC054610.70   4 LPPGFRFFPTEEELVSFYLRNKLEGTRqalhGLIHRVIPVVDIYEFHPSDLPQfagdLCCGDPEQWFFFIPRQESEYHGGRPRRLTTTGYWKATGSP 100
                   79************************95543222347999************645652234677********************************* PP

           NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     v+s +++ vg+k+t+vfy+grap+g+kt+W m+eyr+
  EcC054610.70 101 GLVYS-SNRIVGVKRTMVFYTGRAPSGVKTEWKMNEYRA 138
                   *****.8999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-503165IPR003441NAC domain
PROSITE profilePS5100548.1524165IPR003441NAC domain
PfamPF023654.8E-235137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0055114Biological Processoxidation-reduction process
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0016491Molecular Functionoxidoreductase activity
GO:0035091Molecular Functionphosphatidylinositol binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEDLPPGFRF FPTEEELVSF YLRNKLEGTR QALHGLIHRV IPVVDIYEFH PSDLPQFAGD  60
LCCGDPEQWF FFIPRQESEY HGGRPRRLTT TGYWKATGSP GLVYSSNRIV GVKRTMVFYT  120
GRAPSGVKTE WKMNEYRATE GEASSPQEIP VVPRHEFSVC RVYKKTKTLR SFDRRPMGEI  180
IRSSQTFQQN TMPND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-34316514168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059552.11e-142PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR32e-69NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A059DJG01e-141A0A059DJG0_EUCGR; Uncharacterized protein
STRINGXP_010059552.11e-141(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-72NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]