PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054618.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 226aa    MW: 25253.2 Da    PI: 10.4585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054618.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000990112123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C+ C++ Fs+   L  H  +H
  EcC054618.20  90 YECKTCNRQFSSFQALGGHRASH 112
                   99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-482114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.46E-889161No hitNo description
SMARTSM003550.1190112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.51290117IPR007087Zinc finger, C2H2
PfamPF139126.7E-1290114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM003550.21139161IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66139166IPR007087Zinc finger, C2H2
PfamPF139128.9E-9139163IPR007087Zinc finger, C2H2
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MHASHNSLSH SFRKISSSLR KEKKRHHTNS ILSPISFKSS MSFSSAPTMK RTRDDYERMS  60
LDMAKCLMLL SHGVNAELKR AAVHQTEDNY ECKTCNRQFS SFQALGGHRA SHKKPKLLQN  120
KPGDCTKLAL GGTAETKMHE CSVCGLKFAL GQALGGHMRK HRAELMSGNM MNMDEFFGIN  180
STVPVLNRSN SSSKRVMGLD LNLTPLENDL KFLFGKMAPK IDHSIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11224RKISSSLRKEKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068234.21e-133PREDICTED: zinc finger protein ZAT1
SwissprotQ9SLD44e-45ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A059DEB61e-124A0A059DEB6_EUCGR; Uncharacterized protein
STRINGXP_010068234.11e-117(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-46C2H2 family protein