PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054618.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 179aa    MW: 20043.5 Da    PI: 10.3115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054618.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00114365123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  +kC+ C++ F++   L  H  +H
  EcC054618.40 43 FKCKTCNRQFPSFQALGGHRASH 65
                  89**********99999998887 PP
2zf-C2H213.20.0002692114123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  Fs    L  H+r+H
  EcC054618.40  92 HECSICGLKFSLGQALGGHMRRH 114
                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-53971No hitNo description
PfamPF139122.6E-124367IPR007087Zinc finger, C2H2
SMARTSM003550.0834365IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.934370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576677.09E-688115No hitNo description
PfamPF139129.4E-992115IPR007087Zinc finger, C2H2
SMARTSM003550.1492114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.16292114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MMKRSRDDYE RMNLDMAKCL MLLTHGVNAN PKTAAVHHHE DNFKCKTCNR QFPSFQALGG  60
HRASHKKPKL LETKPEDSTK SVLGTTANPK MHECSICGLK FSLGQALGGH MRRHRVQLMS  120
GSVMKMDEIF AVGPTIPVLK RSKSSNKRVM GLDLNLTPLE NDLKFLFGKM APEIDALLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047364.11e-128PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD49e-49ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM9Z1Z01e-127M9Z1Z0_EUCGR; C2H2-type zinc finger protein 6
STRINGXP_010047364.11e-128(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-51C2H2 family protein