PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054619.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ZF-HD
Protein Properties Length: 190aa    MW: 20649.9 Da    PI: 8.488
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054619.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.29.7e-29758357
   ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                  +  Y+eCl+NhAaslG++a+DGCgEf+ +   ++++ +l+CaACgCHRnFHR+ +
  EcC054619.20  7 NEAYRECLRNHAASLGSYATDGCGEFTLD---DTSPGSLQCAACGCHRNFHRKVT 58
                  678*************************8...6789*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.0E-24958IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.0781057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-241056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-171056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.2E-30101173IPR009057Homeodomain-like
SuperFamilySSF466896.78E-17101171IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-28113171IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006071Biological Processglycerol metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007186Biological ProcessG-protein coupled receptor signaling pathway
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0003993Molecular Functionacid phosphatase activity
GO:0004371Molecular Functionglycerone kinase activity
GO:0004871Molecular Functionsignal transducer activity
GO:0005509Molecular Functioncalcium ion binding
GO:0005524Molecular FunctionATP binding
GO:0005544Molecular Functioncalcium-dependent phospholipid binding
GO:0008270Molecular Functionzinc ion binding
GO:0019001Molecular Functionguanyl nucleotide binding
GO:0031683Molecular FunctionG-protein beta/gamma-subunit complex binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEGDNRNEAY RECLRNHAAS LGSYATDGCG EFTLDDTSPG SLQCAACGCH RNFHRKVTYV  60
SAHAGSGGLM VCRSGGRDNA ELYGGELVEY GRGRQLNMAA DSPESGGGGS GLKKRFRTKF  120
TADQKEKMLA FAEKLGWKMQ RKDAEDEIER FCRSVGVSRQ VFKVWMHNHK NSSSSSTSAS  180
TGNASSLTTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-241141761879ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069461.11e-123PREDICTED: zinc-finger homeodomain protein 9
TrEMBLA0A059AWK71e-121A0A059AWK7_EUCGR; Uncharacterized protein
STRINGXP_010069461.11e-122(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-41homeobox protein 22