PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054671.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 167aa    MW: 18899 Da    PI: 10.2813
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054671.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161153345
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  i n+  r +t+ kR++ ++KKA+E  +LCd++ ++ii+++tg 
  EcC054671.10 11 IPNEKARRITYEKRKKNMMKKAQEFATLCDVDTCMIIYGPTGS 53
                  679999***********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.596152IPR002100Transcription factor, MADS-box
CDDcd002661.63E-18388No hitNo description
SuperFamilySSF554551.44E-19397IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-161153IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009850Biological Processauxin metabolic process
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0010210Molecular FunctionIAA-Phe conjugate hydrolase activity
GO:0010211Molecular FunctionIAA-Leu conjugate hydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDRRKLTLGL IPNEKARRIT YEKRKKNMMK KAQEFATLCD VDTCMIIYGP TGSATATEPE  60
VWPASPGEVK RIIERYMSEG ADRCAKRTVR LPEFFANRER KVDAELTEAL PANRKAKYPV  120
SESLIAGLSK EDLKRLLNSL GRKLEAAKAR LAVMKEDAVR TSSSYMN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039103.11e-114PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A059A5A21e-113A0A059A5A2_EUCGR; Uncharacterized protein
STRINGXP_010039103.11e-114(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-22AGAMOUS-like 82