PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054694.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ZF-HD
Protein Properties Length: 188aa    MW: 21312.9 Da    PI: 8.3809
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054694.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer76.63.3e-24253257
   ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                  ++v+Y+eCl+NhAa+lG + vDGC E+ p+      +a l CaACgCHRn+HR+ +
  EcC054694.70  2 QRVTYNECLHNHAANLGRYMVDGCHEYSPK----IISADLLCAACGCHRNYHRKVT 53
                  689**************************9....45789**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.3E-20453IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.8E-18551IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.634652IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-10651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.0E-15105173IPR009057Homeodomain-like
SuperFamilySSF466894.33E-10106173IPR009057Homeodomain-like
TIGRFAMsTIGR015655.0E-18111169IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030001Biological Processmetal ion transport
GO:0042545Biological Processcell wall modification
GO:0046856Biological Processphosphatidylinositol dephosphorylation
GO:0055085Biological Processtransmembrane transport
GO:0005618Cellular Componentcell wall
GO:0005739Cellular Componentmitochondrion
GO:0009524Cellular Componentphragmoplast
GO:0009536Cellular Componentplastid
GO:0009574Cellular Componentpreprophase band
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008017Molecular Functionmicrotubule binding
GO:0015299Molecular Functionsolute:proton antiporter activity
GO:0030599Molecular Functionpectinesterase activity
GO:0046873Molecular Functionmetal ion transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MQRVTYNECL HNHAANLGRY MVDGCHEYSP KIISADLLCA ACGCHRNYHR KVTIFDPDNT  60
EASGNHSPGD HNLITPKEES FDHEAVLPMI GTGGEDERLN QLVDPAQHEK KKRPKSRFTK  120
EQVEQMRAFA ENLGWSTRDR SRVPEIMVFC ASMGITKVVF TTWLYNNKKH YGRGSSSKKN  180
SSSTRDGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068685.11e-140PREDICTED: zinc-finger homeodomain protein 10
TrEMBLA0A059BFM21e-129A0A059BFM2_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010068685.11e-139(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.15e-31homeobox protein 32