PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054698.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 156aa    MW: 17456.5 Da    PI: 4.3465
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054698.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB69.46.5e-221396588
         NF-YB  5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                  d+      +++i+k++lP + ++++da++++ ec +efi +v+se++d c+re+++ti+++ +l al  lGf +y+e++ +  +
  EcC054698.80 13 DAXXXXXTMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYE 96
                  5555666789*******************************************************************9865443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.3E-3512140IPR009072Histone-fold
SuperFamilySSF471133.39E-3120142IPR009072Histone-fold
PfamPF008082.5E-182079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006096Biological Processglycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0007018Biological Processmicrotubule-based movement
GO:0009446Biological Processputrescine biosynthetic process
GO:0015914Biological Processphospholipid transport
GO:0055114Biological Processoxidation-reduction process
GO:0000015Cellular Componentphosphopyruvate hydratase complex
GO:0005730Cellular Componentnucleolus
GO:0016021Cellular Componentintegral component of membrane
GO:0000287Molecular Functionmagnesium ion binding
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0004012Molecular Functionphospholipid-translocating ATPase activity
GO:0004634Molecular Functionphosphopyruvate hydratase activity
GO:0004668Molecular Functionprotein-arginine deiminase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005509Molecular Functioncalcium ion binding
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0016844Molecular Functionstrictosidine synthase activity
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0047632Molecular Functionagmatine deiminase activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDPMDIVGKS KEDAXXXXXT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND  60
VCNREEKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKH ETMQDSLKGG KWSNGAEMTE  120
EALLAEQQRM FAEARARMNG GAAVPKQADV DSNVES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B7e-321213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031455.11e-109PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_010031462.11e-109PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_018723264.11e-109PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_018723265.11e-109PREDICTED: protein Dr1 homolog isoform X1
SwissprotP495921e-89NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A059D0391e-107A0A059D039_EUCGR; Uncharacterized protein
STRINGXP_010031447.11e-108(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.25e-92nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]