PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054707.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 348aa    MW: 39568.9 Da    PI: 7.9459
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054707.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.67.7e-19121189158
      trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenln 58 
                   +Wt+++v++Li+a+++++e++++++           +kk++W+++sk+++erg+++sp+qC++k+++ln
  EcC054707.40 121 KWTDKMVRLLITAVSYIGEDSGSDCggggrrkfavlQKKGKWKSISKVLAERGYHVSPQQCEDKFNDLN 189
                   7**********************9889999999999********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.9E-15119189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009846Biological Processpollen germination
GO:0009860Biological Processpollen tube growth
GO:0055114Biological Processoxidation-reduction process
GO:0060321Biological Processacceptance of pollen
GO:0005829Cellular Componentcytosol
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEGNMSQGGM IPGNPAYGGL DLQRSMQIHG QAQQSHTLHQ PHHSHPRQTP GVHPSIHEGF  60
PLTMGALPGC DQMISVGDFN KGERCKNSAS DDDDPSFTED GIDNHNDVSK GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED SGSDCGGGGR RKFAVLQKKG KWKSISKVLA ERGYHVSPQQ  180
CEDKFNDLNX XXXXXXXXXX XXXXXXXAPH GDGRTMCGVL KGSAKRMKQA QGHEDFSFGS  240
SLNVQEFNKS SHSHSHMVHP DMNQTFSENR AWSQEQSNES RSLQLEEQKL QIQYEMLELE  300
KQRSKWERFC KKRDRELEKM KMENEKMKLE NERMALELRR KEMGVDFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063872.11e-127PREDICTED: uncharacterized protein LOC104450863
TrEMBLA0A2P5YI901e-147A0A2P5YI90_GOSBA; Uncharacterized protein
STRINGXP_010063872.11e-127(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-64sequence-specific DNA binding transcription factors