PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054718.140
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 170aa    MW: 19667.8 Da    PI: 10.436
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054718.140genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.9e-27959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krie  s rqvtfskRrng++KKA+ELSvLCdae+a+++fss+gk y ++s
  EcC054718.140  9 KRIEKASSRQVTFSKRRNGLFKKAFELSVLCDAEIALLVFSSSGKCYQFAS 59
                   79***********************************************86 PP
2K-box67.35.1e-2382169996
          K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                    +  + ae ++ e+  L + ie+++ +++hl GedL+ L++keL+qLe+qL+++++++RskK +++ e ++ l++  + lqeen +L k
  EcC054718.140  82 QGCRSAEFWRAEIHELTRGIETMEAQLKHLCGEDLSMLDVKELRQLERQLKTGVERVRSKKRRIISEGVNLLKRNLRVLQEENARLLK 169
                    3344579****************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.455161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-31286IPR002100Transcription factor, MADS-box
CDDcd002651.27E-37271No hitNo description
PRINTSPR004043.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2085169IPR002487Transcription factor, K-box
PROSITE profilePS5129712.27987170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0030001Biological Processmetal ion transport
GO:0045492Biological Processxylan biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008641Molecular Functionsmall protein activating enzyme activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0046872Molecular Functionmetal ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGRGKVELKR IEKASSRQVT FSKRRNGLFK KAFELSVLCD AEIALLVFSS SGKCYQFASH  60
DMDRTIVKYR DELGLPQSSQ NQGCRSAEFW RAEIHELTRG IETMEAQLKH LCGEDLSMLD  120
VKELRQLERQ LKTGVERVRS KKRRIISEGV NLLKRNLRVL QEENARLLKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-24182181MEF2 CHIMERA
6bz1_B1e-24182181MEF2 CHIMERA
6bz1_C1e-24182181MEF2 CHIMERA
6bz1_D1e-24182181MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037400.21e-118PREDICTED: MADS-box transcription factor 23 isoform X1
TrEMBLA0A059A5K11e-117A0A059A5K1_EUCGR; Uncharacterized protein
STRINGXP_010037400.11e-118(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-43AGAMOUS-like 16