PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054759.130

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 244aa MW: 27725 Da PI: 5.7064

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054759.130	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.7	6.5e-38	5	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p GfrF Pt+eel+++yL++++ g + ++ ++vi+ +di+++ePw+Lp+ +++++++w+fF++ ++++a+g r++r++++gyWkatg+ v EcC054759.130 5 PTGFRFYPTEEELISFYLHNQLGGLNQDElHRVIPVLDIFNTEPWNLPQlageLCREDREQWFFFAPLQEREARGGRPSRSMATGYWKATGSPGYV 100 89*******************9995551667***********656654445677******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++g+kk+++fy g+ ++g+kt+W ++ yr+ EcC054759.130 101 YSSDNKVIGVKKSMIFYMGKPSTGRKTHWKLNLYRA 136 *****************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-40	3	166	IPR003441	NAC domain
PROSITE profile	PS51005	42.588	4	168	IPR003441	NAC domain
Pfam	PF02365	1.6E-17	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0016747	Molecular Function	transferase activity, transferring acyl groups other than amino-acyl groups

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEKYPTGFRF YPTEEELISF YLHNQLGGLN QDELHRVIPV LDIFNTEPWN LPQLAGELCR 60 EDREQWFFFA PLQEREARGG RPSRSMATGY WKATGSPGYV YSSDNKVIGV KKSMIFYMGK 120 PSTGRKTHWK LNLYRAIELS PTNLDSTSSN ISIPKLRREF ALCRVYVVSG RSRAFDRRRL 180 EAVARETTIQ GSDNTASSEG GHEGDGCADA SSSEAVVANA GSSHQWEMAS LEDPIWDWEQ 240 LDWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-29	5	166	21	166	NAC domain-containing protein 19
3swm_B	4e-29	5	166	21	166	NAC domain-containing protein 19
3swm_C	4e-29	5	166	21	166	NAC domain-containing protein 19
3swm_D	4e-29	5	166	21	166	NAC domain-containing protein 19
3swp_A	4e-29	5	166	21	166	NAC domain-containing protein 19
3swp_B	4e-29	5	166	21	166	NAC domain-containing protein 19
3swp_C	4e-29	5	166	21	166	NAC domain-containing protein 19
3swp_D	4e-29	5	166	21	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010030466.1	1e-169	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-86	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059AML1	1e-167	A0A059AML1_EUCGR; Uncharacterized protein
STRING	XP_010030466.1	1e-168	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-89	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]