PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054759.90

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 244aa MW: 27798.1 Da PI: 6.3692

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054759.90	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.6	4.7e-40	5	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p GfrF Pt+eel+++yL++++ g k el++vi+ +di+++ePw+Lp+ +++++++w+fF++ ++++a+g r++r++++gyWkatg+ v+ EcC054759.90 5 PTGFRFYPTEEELISFYLHNQLGGLKqDELHRVIPVLDIFNTEPWNLPQlageLCREDREQWFFFAPLQEREARGGRPSRSMATGYWKATGSPGYVY 101 89*******************9993445667***********656654445677********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s++++++g+kk+++fy g++p+g+kt+W ++eyr+ EcC054759.90 102 SSDNKVIGVKKSMIFYMGKTPTGRKTHWKLNEYRA 136 *******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-42	3	166	IPR003441	NAC domain
PROSITE profile	PS51005	44.479	4	168	IPR003441	NAC domain
Pfam	PF02365	3.7E-19	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0016747	Molecular Function	transferase activity, transferring acyl groups other than amino-acyl groups

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEKYPTGFRF YPTEEELISF YLHNQLGGLK QDELHRVIPV LDIFNTEPWN LPQLAGELCR 60 EDREQWFFFA PLQEREARGG RPSRSMATGY WKATGSPGYV YSSDNKVIGV KKSMIFYMGK 120 TPTGRKTHWK LNEYRAIELS PTNLDSTSSN ISIPKLRREF ALCRVYVVSR RSRAFDRRRL 180 EAVSRETTIQ GSDNTASSEG GHEGGGCADA SSSEAVAANA GSSHQWEMAS LEDPIWDWEQ 240 LDWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-31	5	166	18	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-31	5	166	18	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-31	5	166	18	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-31	5	166	18	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	5	166	21	166	NAC domain-containing protein 19
3swm_B	1e-31	5	166	21	166	NAC domain-containing protein 19
3swm_C	1e-31	5	166	21	166	NAC domain-containing protein 19
3swm_D	1e-31	5	166	21	166	NAC domain-containing protein 19
3swp_A	1e-31	5	166	21	166	NAC domain-containing protein 19
3swp_B	1e-31	5	166	21	166	NAC domain-containing protein 19
3swp_C	1e-31	5	166	21	166	NAC domain-containing protein 19
3swp_D	1e-31	5	166	21	166	NAC domain-containing protein 19
4dul_A	1e-31	5	166	18	163	NAC domain-containing protein 19
4dul_B	1e-31	5	166	18	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010030470.1	1e-170	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	9e-88	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059AKW6	1e-169	A0A059AKW6_EUCGR; Uncharacterized protein
STRING	XP_010030470.1	1e-170	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-84	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]