PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054762.100
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 682aa    MW: 78566.4 Da    PI: 6.5928
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054762.100genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.3e-2168159190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                    ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk + +++r r++ r+gC+ak+ ++ke     ++w+v ++++ HnHel 
  EcC054762.100  68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVRKKPSGEHHRDRKSVRCGCDAKMYLSKEVvegISQWCVVQFSNVHNHELL 159
                    59********************8888.*******************************************99867789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-1968159IPR004330FAR1 DNA binding domain
PfamPF105515.8E-20291383IPR018289MULE transposase domain
PROSITE profilePS509669.953563598IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-8570598IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003676Molecular Functionnucleic acid binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MTSLSSKNIW IQRQQCPCGD WKCFVAYEGN NEETAVASQL AKAKAASAEA MVVPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVR KKPSGEHHRD  120
RKSVRCGCDA KMYLSKEVVE GISQWCVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFI QNRKKVVQEN DALLNEKREN  240
DIMELLEACK ASKEADEGFC FDCSVDDNDK LEHIAWSYGN SVNAYTMFGD VVHFDTSYRS  300
ITYGMLFGAW FGIDSNGRMI IFGCVLLQDE APRSFAWALQ SFVQFMRGRS PQTILTDLDP  360
GLRDAVRGEL PNTKHITCIW NISPKVSSWF SVPLGCQYAE FRSEFDALHC VENTEDFELR  420
WNEMVSQFGL GSDKHIALLY SIRTSWALCY TRGHFLARMT TVAFFRSVES FLKGIFSPNA  480
CLRSFFDQVG ISANFHNQSH LEMQYMPSKA CIPMEEHASS ILTPFAFNAL QNELVLAMQY  540
AMSELADGSY LLRHYKKMDG DCLVMWITEE EQIHCSCKEF ESSGILCRHA LSVFIRKNYF  600
QLPGKYFITR WRRESSRTCY DEPAPQDSDN EWFREYQSLS ESLFTESSLT RGRTNYVRRE  660
LMKEVKRILE EVRSMPETDG VA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052962.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_010052963.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A059CFU30.0A0A059CFU3_EUCGR; Uncharacterized protein
STRINGXP_010052961.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]