PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054787.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 458aa    MW: 51218.5 Da    PI: 8.5681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054787.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012394416123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++Cp+C ++F++   L  H r+H
  EcC054787.50 394 HECPICFRVFRSGQALGGHKRSH 416
                   79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-6730IPR007087Zinc finger, C2H2
SMARTSM003552.1729IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
PROSITE profilePS501579.95182109IPR007087Zinc finger, C2H2
SMARTSM003550.1882104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.27E-683104No hitNo description
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
PfamPF139125.1E-684106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-6389416No hitNo description
PfamPF139121.2E-10393416IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037394416IPR007087Zinc finger, C2H2
SMARTSM003550.17394416IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280396416IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
GO:0008184Molecular Functionglycogen phosphorylase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MNRKMDFVCK YCNKRYPCGR SLGGHLSSHK IVDSLAGEDG RHCNDHGGKE FRAEGNSGHC  60
LRENQKETRS FEDLGSKLRV GNVCRECGKG FQSLKALCGH MACHSEKEKG TNHRKDELEY  120
SEKQILEMDV VPDPEASAQI QCRRSKRIKC RVPEKILVSG SSAVSEIGQE QEEVAKCLMM  180
LSRDTSNFKG ACTWIRDGSN HNSDHFEAKS LSSDVRSGKS GEIDVSNSYC SGYVRIGVKR  240
TESDRSVDDS ISIRELKNHK LVCGSKASED GVEWRKLLNR IKHEAEGVEG TIREALDVSK  300
KRVENDMQRS FSDWKNGSVI GEKIFDSPRK LAKHKDCHKK LKMSASSEYE SSKAGGEIDT  360
SHNPARVIRD QELCTGETAT RKEKKTGTRK NNRHECPICF RVFRSGQALG GHKRSHFLAG  420
SKDKAMATQQ DVHKVPASID LNLPAWEEEN GEAGLLSW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724608.10.0PREDICTED: uncharacterized protein LOC104433394
RefseqXP_018724609.10.0PREDICTED: uncharacterized protein LOC104433394
TrEMBLA0A059D7Z10.0A0A059D7Z1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010044422.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-52C2H2-like zinc finger protein