PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054789.140
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 729aa    MW: 80467.3 Da    PI: 6.156
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054789.140genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1962117156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    r++ +++t+ q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  EcC054789.140  62 RKRYHRHTQRQIQELEAFFKESPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 117
                    688899***********************************************998 PP
2START213.29.6e-672484691206
                    HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                    ela +a++el+++a+ +ep+W         e++n+de+ ++f+++ +     +++ea+r+s+vv+m++ +lv++l+d   qW+  +     +a+t+
  EcC054789.140 248 ELAVAAMEELIRMAQGGEPLWIPAGsgqpsEILNEDEYFRIFPRGIGpkplgFKSEASRESAVVIMNHINLVQILMDEH-QWSGVFCgivsRAMTI 342
                    57899****************988888999**************999********************************.******99999***** PP

                    EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
          START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                    ev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ + +p    + R++++pSg+li++++ng+skvtwvehv+
  EcC054789.140 343 EVLSTGvagnynGALQVMTAEFQVPSPLVPsRENYFVRYCKQHGDGTWAVVDVSLDNIRGNP----ILRSRRRPSGCLIQELPNGYSKVTWVEHVE 434
                    *************************************************************9....6***************************** PP

                    --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                    +++r +h+++r+lv+ gla+gak+wvatl+rqce+
  EcC054789.140 435 VDDRAVHSIYRPLVNCGLAFGAKRWVATLDRQCER 469
                    *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-2242117IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2045119IPR009057Homeodomain-like
PROSITE profilePS5007117.91259119IPR001356Homeobox domain
SMARTSM003892.2E-1860123IPR001356Homeobox domain
CDDcd000861.28E-1861120No hitNo description
PfamPF000463.1E-1762117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PROSITE profilePS5084845.309239472IPR002913START domain
SuperFamilySSF559612.64E-35241471No hitNo description
CDDcd088751.54E-127243468No hitNo description
SMARTSM002341.5E-66248469IPR002913START domain
PfamPF018526.1E-56249469IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-6350467IPR023393START-like domain
SuperFamilySSF559617.14E-24488721No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001522Biological Processpseudouridine synthesis
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0015074Biological ProcessDNA integration
GO:0016021Cellular Componentintegral component of membrane
GO:0003723Molecular FunctionRNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005215Molecular Functiontransporter activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0008289Molecular Functionlipid binding
GO:0009982Molecular Functionpseudouridine synthase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MFQPNMFESH HHLLDITGAR SSESEVLKMR EIEDFETKSG TETMEPDPSG DDVQDPNQRQ  60
KRKRYHRHTQ RQIQELEAFF KESPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKAQH  120
ERHENAILKA ENEKLRAENM RYREALSTAT CPNCGGPAAL GEMSFDEQHL RIENARLKEE  180
IDRISVIASK YVGKPLASNY PHLPPHMSSR SPDQFPAQSG LVGEMYGGID LRRSVSMPSE  240
ADKPLIVELA VAAMEELIRM AQGGEPLWIP AGSGQPSEIL NEDEYFRIFP RGIGPKPLGF  300
KSEASRESAV VIMNHINLVQ ILMDEHQWSG VFCGIVSRAM TIEVLSTGVA GNYNGALQVM  360
TAEFQVPSPL VPSRENYFVR YCKQHGDGTW AVVDVSLDNI RGNPILRSRR RPSGCLIQEL  420
PNGYSKVTWV EHVEVDDRAV HSIYRPLVNC GLAFGAKRWV ATLDRQCERL ASSMANNIPS  480
GDLLITSPEG RRSMLKLAER MVLSFCSGVG ASTAHAWTTL SAAGSDNNVR VMTRKSMDEP  540
GRPPGIVLSA ATSFWLPVPP KRVFDFLRDE NSRNEWDILS NGGQVQEMAH IANGRDPGNS  600
VSLLRVNNAN SSQSNMLILQ ESCTDSIGAY VIYAPVDIVA MNVVLNGGDP DYVALLPSGF  660
AILPDGPEFG GGGGILEIGS GGSLLTVAFQ ILVDTVPSAK LSLGSVATVN NLIKCTVERI  720
KASVSCDNP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057969.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
RefseqXP_018728495.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A059CAG50.0A0A059CAG5_EUCGR; Uncharacterized protein
STRINGXP_010057969.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]