PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054790.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 434aa    MW: 48071.3 Da    PI: 6.506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054790.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000281733319
                  ETTTTEEESSHHHHHHH CS
       zf-C2H2  3 CpdCgksFsrksnLkrH 19
                  C++Cgk Fs++ ++  H
  EcC054790.10 17 CENCGKEFSSWKSFLEH 33
                  **************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552401535IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.14E-7158181No hitNo description
PROSITE profilePS5015710.076159186IPR007087Zinc finger, C2H2
PfamPF139121.2E-9159183IPR007087Zinc finger, C2H2
SMARTSM003550.13159181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SuperFamilySSF576679.14E-7236263No hitNo description
PfamPF139122.3E-13240264IPR007087Zinc finger, C2H2
SMARTSM003550.44241263IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369241263IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0055114Biological Processoxidation-reduction process
GO:0003676Molecular Functionnucleic acid binding
GO:0016779Molecular Functionnucleotidyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MYGLRANPNR LKSCRACENC GKEFSSWKSF LEHGKCGAGS EDVGDSYSSS PESEDEEDGV  60
SRRRGCKWSK RKRSLRVKVD NANSNCPSSE EEDLANCLMM LSNGMVDPSS AEPEESCASA  120
SKDEERRRPI SFIAPLAFRS PPTTDKAKGV IPNKGQGLFE CKACKKVFNS HQALGGHRAS  180
HKKVKGCFAA RVDHTYDWVP DEDAITQDEF FMTKSMASNS PFDHGLSSSL PSTSKRKSKV  240
HECSICHRVF SSGQALGGHK RCHWITSNPA DAPALAKLQH LHEQMEQIQQ MPGKFIDPDD  300
PLNLKLDLNL PAPSDDLRRD PMNSPTTRFA RVSAEMYLQS WLGLHPKESE HNNQHMEEND  360
FNSNKNDNEK NNNMDNNYND DSNIATTHSA VDDEAESKVK LAKLSELKDV NISGGSSSWL  420
QVGIGSTTAE EATK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053943.10.0PREDICTED: zinc finger protein ZAT4
TrEMBLA0A059CJ920.0A0A059CJ92_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010053943.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-25C2H2-like zinc finger protein