PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054796.120
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 290aa    MW: 32885 Da    PI: 6.9512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054796.120genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-202878155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g
  EcC054796.120 28 CSYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARKLYG 78
                   67*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-132878IPR001471AP2/ERF domain
CDDcd000186.91E-312888No hitNo description
Gene3DG3DSA:3.30.730.101.1E-302987IPR001471AP2/ERF domain
PROSITE profilePS5103222.7872986IPR001471AP2/ERF domain
SMARTSM003809.2E-372992IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-212987IPR016177DNA-binding domain
PRINTSPR003672.3E-103041IPR001471AP2/ERF domain
PRINTSPR003672.3E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006164Biological Processpurine nucleotide biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004019Molecular Functionadenylosuccinate synthase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016746Molecular Functiontransferase activity, transferring acyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDSSRKSPMK PWKKGPARGK GGPLNASCSY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARKLYGPD AYLNLPHLCH QPPPDSSVFS SNRPLHHKFK WFPSKNFISM  120
FPSCGLLNLS AQPNVHVIHQ RLEELRKNGG FGGAASPSSS SSDSRIDTRR RTDLEVGKLK  180
EKEFEILSEK APATGHREEK PQIDLNEFLE QLGVLKEDNQ SKEVVDVNGT EEGMFKDYEQ  240
IVAFDEKGIN WDSLMEMHGY ADQQIYAEGN TCQVYDISEE FALPSTIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-173086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057479.10.0PREDICTED: dehydration-responsive element-binding protein 2F
SwissprotQ9SVX52e-81DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A059DI320.0A0A059DI32_EUCGR; Uncharacterized protein
STRINGXP_010057479.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-71ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]