PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054796.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 236aa    MW: 26743.9 Da    PI: 4.8474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054796.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014211233123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++Cp C k+F+r  n+++H  tH
  EcC054796.40 211 FSCPVCFKTFNRYNNMQTHTHTH 233
                   89*****************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-5184234No hitNo description
PROSITE profilePS5015711.219211236IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5211234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280213235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006164Biological Processpurine nucleotide biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004019Molecular Functionadenylosuccinate synthase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016746Molecular Functiontransferase activity, transferring acyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTDPFFKFNP LHHHHHHYFS PPSNPQPPYY YSSSAYHNFT FVDHHHEQTP PPHPPIREAL  60
PLLSLLSPTR QQEQEQDQEQ EQEHEQGQGQ GQNQEENFLM EVDRPKQSAG AQDEDDDGDQ  120
DDDDDDETGV TVALHIGLPS PTAAELASVM MLASSSSSCS SSEIITAHDH HNKPDQEHGV  180
GEDCGYLMSR INKGQYWIPT PSQILIGPTQ FSCPVCFKTF NRYNNMQTHT HTHTHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057579.11e-107PREDICTED: zinc finger protein WIP2
TrEMBLA0A059DIY21e-66A0A059DIY2_EUCGR; Uncharacterized protein
STRINGXP_010057579.11e-106(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-30C2H2 family protein