PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054802.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 105aa    MW: 12474.5 Da    PI: 10.9206
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054802.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.75e-332684159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                  ldDg++WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  EcC054802.60 26 LDDGFRWRKYGQKAVKNSVHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGIHNHP 84
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-331284IPR003657WRKY domain
SuperFamilySSF1182906.54E-292085IPR003657WRKY domain
PROSITE profilePS5081127.7372186IPR003657WRKY domain
SMARTSM007741.5E-372685IPR003657WRKY domain
PfamPF031062.6E-262784IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006032Biological Processchitin catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0006887Biological Processexocytosis
GO:0007020Biological Processmicrotubule nucleation
GO:0031122Biological Processcytoplasmic microtubule organization
GO:0048278Biological Processvesicle docking
GO:0000930Cellular Componentgamma-tubulin complex
GO:0005840Cellular Componentribosome
GO:0032040Cellular Componentsmall-subunit processome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003924Molecular FunctionGTPase activity
GO:0004568Molecular Functionchitinase activity
GO:0005515Molecular Functionprotein binding
GO:0016853Molecular Functionisomerase activity
GO:0030246Molecular Functioncarbohydrate binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
KKVTNRTRKP TRPRIAFQTR SVDDILDDGF RWRKYGQKAV KNSVHPRSYY RCTHHTCNVK  60
KQVQRLAKDT SIVVTTYEGI HNHPCEKLME TLTPLLKQMQ FLSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-251683774Probable WRKY transcription factor 4
2ayd_A4e-251483271WRKY transcription factor 1
2lex_A3e-251683774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055075.14e-75PREDICTED: probable WRKY transcription factor 24
SwissprotQ8VWQ45e-56WRK56_ARATH; Probable WRKY transcription factor 56
SwissprotQ9FFS34e-56WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A059C0129e-74A0A059C012_EUCGR; Uncharacterized protein
STRINGXP_010055075.11e-74(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.12e-58WRKY DNA-binding protein 24